Jack/Daniel
Most links lead to Live Journal pages. Now almost all SG1 stories can be found on AO3. See link below. Story summaries and warnings can be found in headers there.
The General In His Bed - NC-17
One - PG (Spoilers for Abyss)
Quasars, Protocols, and the Number 200(spoilers for "200")-NC-17
Always(spoilers for "Season 5 Miridian")-PG
Nothing Good Ever Happens in Spaceships(spoilers for "Season 10 The Shroud and Unending")-R
The Losers Series
Jack Thinking Out of the Box
PG
AU Fairytale Staring Jack and Daniel